| Protein ZmMADS13 | |
|---|---|
|
ZmMADS13 is a protein in the MADS family.
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| Information | |
| TF Name: | ZmMADS13 |
| Species: | Maize |
| TF Family: | MADS |
| Gene Name(Synonym): | MADS13 |
| Uniprot ID: | A0A1D6PDQ1 |
Protein ZmMADS13
ZmMADS13 is a protein in the MADS family. NOTE the "Uniprot ID" shown on the right is a placeholder for testing. The interactive structure shown is based on that id.
Protein-DNA Interactions
Meme Logos for Maize v4 Gene IDs
| Gene ID | Type | MEME Logo | Sequence | FIMO | Position |
|---|---|---|---|---|---|
| Zm00001d019213 | DAPseq |  |
sequence | fimo | position |
| Zm00001d019213 | DAPseq |  |
sequence | fimo | position |
| Zm00001d019213 | ChIPseq |  |
sequence | fimo | position |
| Zm00001d019213 | PChIPseq |  |
sequence | fimo | position |
Interactions where ZmMADS13 is the regulator
Interactions where ZmMADS13 is the target
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Zm00001eb303660_T001 from maize genome v5
Amino Acid Sequence
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MTRKKMEMKPIENEEARQVCFSKRRQGLFKKASELSILCGATVGSVVFSTSGRSYSFGHPSINDVADRFLSSVAPGGLAS
GGASASHGGSGTTSGAVTDTVHRLNMEYLELQQSLDSEKKKKERLQEAAAKEMGGRVMQCLNANVFELGLAELQELQKWL
EAVDGAVKEKANRILAEARARQTARGPSLVPQPPMEMDIASTSRHLQSGTRHIGADSVALSFAGPSSSNNGFVGGSPEVH
DPLLIVSGGRLQDVCGLGSFPNNQKNHG
MTRKKMEMKPIENEEARQVCFSKRRQGLFKKASELSILCGATVGSVVFSTSGRSYSFGHPSINDVADRFLSSVAPGGLAS
GGASASHGGSGTTSGAVTDTVHRLNMEYLELQQSLDSEKKKKERLQEAAAKEMGGRVMQCLNANVFELGLAELQELQKWL
EAVDGAVKEKANRILAEARARQTARGPSLVPQPPMEMDIASTSRHLQSGTRHIGADSVALSFAGPSSSNNGFVGGSPEVH
DPLLIVSGGRLQDVCGLGSFPNNQKNHG
| Secondary Structure Color Code | |
|---|---|
| BEND | region with high backbone curvature without specific hydrogen bonding |
| HELX_LH_PP_P | left-handed polyproline helix |
| HELX_RH_3T_P | right-handed 3-10 helix |
| HELX_RH_AL_P | right-handed alpha helix |
| HELX_RH_PI_P | right-handed pi helix |
| STRN | beta strand |
| TURN_TY1_P | type I turn |
| UNDETERMINED | no data available |
Nucleotide Sequence
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ATGACAAGGAAAAAGATGGAGATGA...
ATGACAAGGAAAAAGATGGAGATGAAGCCCATCGAGAACGAGGAGGCACGTCAGGTTTGCTTCTCCAAGCGCCGCCAGGGCCTGTTCAAGAAGGCCAGTGAGCTCTCCATCCTGTGTGGAGCGACGGTTGGCTCTGTCGTCTTCTCGACCTCCGGCAGGTCCTACTCTTTCGGCCATCCGTCCATCAACGACGTCGCGGACCGGTTCCTCAGTTCCGTTGCTCCTGGTGGCCTTGCTTCGGGTGGCGCAAGCGCAAGCCATGGTGGTAGTGGTACTACCAGCGGAGCAGTGACAGACACTGTCCACAGGCTGAACATGGAGTACCTGGAGCTGCAGCAGTCTCTAGACTCTGAAAAGAAGAAAAAGGAGAGGTTGCAGGAGGCTGCTGCGAAGGAAATGGGCGGACGCGTGATGCAGTGTCTGAATGCCAATGTCTTTGAGTTGGGCTTAGCCGAGCTGCAAGAGCTGCAGAAGTGGCTGGAAGCCGTGGATGGCGCAGTCAAAGAGAAGGCCAACAGGATACTAGCTGAAGCGAGGGCAAGGCAAACCGCTCGAGGCCCGTCGCTGGTGCCACAGCCACCTATGGAGATGGACATAGCATCCACTTCGCGGCACCTGCAGTCTGGTACTCGGCACATCGGTGCCGATTCAGTGGCTTTGTCTTTCGCTGGTCCTAGCTCGAGCAATAATGGATTCGTTGGTGGATCGCCGGAAGTCCACGATCCCTTGCTTATTGTTAGCGGCGGTCGTCTCCAGGATGTTTGTGGCCTGGGGAGTTTCCCAAACAACCAGAAGAATCATGGTTGA
GRMZM2G472100_T01 from maize genome v3
Amino Acid Sequence
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MTRKKMEMKPIENEEARQVCFSKRRQGLFKKASELSILCGATVGSVVFSTSGRSYSFGHPSINDVADRFLSSVAPGGLAS
GGASASHGGSGTTSGAVTDTVHRLNMEYLELQQSLDSEKKKKERLQEAAAKEMGGRVMQCLNANVFELGLAELQELQKWL
EAVDGAVKEKANRILAEARARQTARGPSLVPQPPMEMDIASTSRHLQSGTRHIGADSVALSFAGPSSSNNGFVGGSPEVH
DPLLIVSGGRLQDVCGLGSFPNNQKNHG
Nucleotide Sequence
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GAAGGGGTATCCACCATGACAAGGA...
GAAGGGGTATCCACCATGACAAGGAAAAAGATGGAGATGAAGCCCATCGAGAACGAGGAGGCACGTCAGGTTTGCTTCTCCAAGCGCCGCCAGGGCCTGTTCAAGAAGGCCAGTGAGCTCTCCATCCTGTGTGGAGCGACGGTTGGCTCTGTCGTCTTCTCGACCTCCGGCAGGTCCTACTCTTTCGGCCATCCGTCCATCAACGACGTCGCGGACCGGTTCCTCAGTTCCGTTGCTCCTGGTGGCCTTGCTTCGGGTGGCGCAAGCGCAAGCCATGGTGGTAGTGGTACTACCAGCGGAGCAGTGACAGACACTGTCCACAGGCTGAACATGGAGTACCTGGAGCTGCAGCAGTCTCTAGACTCTGAAAAGAAGAAAAAGGAGAGGTTGCAGGAGGCTGCTGCGAAGGAAATGGGCGGACGCGTGATGCAGTGTCTGAATGCCAATGTCTTTGAGTTGGGCTTAGCCGAGCTGCAAGAGCTGCAGAAGTGGCTGGAAGCCGTGGATGGCGCAGTCAAAGAGAAGGCCAACAGGATACTAGCTGAAGCGAGGGCAAGGCAAACCGCTCGAGGCCCGTCGCTGGTGCCACAGCCACCTATGGAGATGGACATAGCATCCACTTCGCGGCACCTGCAGTCTGGTACTCGGCACATCGGTGCCGATTCAGTGGCTTTGTCTTTCGCTGGTCCTAGCTCGAGCAATAATGGATTCGTTGGTGGATCGCCGGAAGTCCACGATCCCTTGCTTATTGTTAGCGGCGGTCGTCTCCAGGATGTTTGTGGCCTGGGGAGTTTCCCAAACAACCAGAAGAATCATGGTTGA
Zm00001d019213_T001 from maize genome v4
Amino Acid Sequence
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MTRKKMEMKPIENEEARQVCFSKRRQGLFKKASELSILCGATVGSVVFSTSGRSYSFGHPSINDVADRFLSSVAPGGLAS
GGASASHGGSGTTSGAVTDTVHRLNMEYLELQQSLDSEKKKKERLQEAAAKEMGGRVMQCLNANVFELGLAELQELQKWL
EAVDGAVKEKANRILAEARARQTARGPSLVPQPPMEMDIASTSRHLQSGTRHIGADSVALSFAGPSSSNNGFVGGSPEVH
DPLLIVSGGRLQDVCGLGSFPNNQKNHG
Nucleotide Sequence
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ATGACAAGGAAAAAGATGGAGATGA...
ATGACAAGGAAAAAGATGGAGATGAAGCCCATCGAGAACGAGGAGGCACGTCAGGTTTGCTTCTCCAAGCGCCGCCAGGGCCTGTTCAAGAAGGCCAGTGAGCTCTCCATCCTGTGTGGAGCGACGGTTGGCTCTGTCGTCTTCTCGACCTCCGGCAGGTCCTACTCTTTCGGCCATCCGTCCATCAACGACGTCGCGGACCGGTTCCTCAGTTCCGTTGCTCCTGGTGGCCTTGCTTCGGGTGGCGCAAGCGCAAGCCATGGTGGTAGTGGTACTACCAGCGGAGCAGTGACAGACACTGTCCACAGGCTGAACATGGAGTACCTGGAGCTGCAGCAGTCTCTAGACTCTGAAAAGAAGAAAAAGGAGAGGTTGCAGGAGGCTGCTGCGAAGGAAATGGGCGGACGCGTGATGCAGTGTCTGAATGCCAATGTCTTTGAGTTGGGCTTAGCCGAGCTGCAAGAGCTGCAGAAGTGGCTGGAAGCCGTGGATGGCGCAGTCAAAGAGAAGGCCAACAGGATACTAGCTGAAGCGAGGGCAAGGCAAACCGCTCGAGGCCCGTCGCTGGTGCCACAGCCACCTATGGAGATGGACATAGCATCCACTTCGCGGCACCTGCAGTCTGGTACTCGGCACATCGGTGCCGATTCAGTGGCTTTGTCTTTCGCTGGTCCTAGCTCGAGCAATAATGGATTCGTTGGTGGATCGCCGGAAGTCCACGATCCCTTGCTTATTGTTAGCGGCGGTCGTCTCCAGGATGTTTGTGGCCTGGGGAGTTTCCCAAACAACCAGAAGAATCATGGTTGA
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